fold_change_int {structToolbox}R Documentation

fold change for interactions class

Description

Calculates fold change between groups for interactions between levels of factors. Note that paired forced to FALSE for all comparisons.

Usage

fold_change_int(
  alpha = 0.05,
  factor_name,
  threshold = 2,
  control_group = character(0),
  ...
)

Arguments

alpha

confidence level to use for intervals

factor_name

the sample_meta column to use

threshold

a threshold to define fold change as 'significant'.

control_group

a level of factor name to use as the control group for calculations.

...

additional slots and values passed to struct_class

Value

struct object

Examples

D = MTBLS79_DatasetExperiment()
D=D[,1:10,drop=FALSE]
M = filter_smeta(mode='exclude',levels='QC',factor_name='class') +
    fold_change_int(factor_name=c('class','batch'))
M = model_apply(M,D)


[Package structToolbox version 1.0.1 Index]