feature_profile {structToolbox}R Documentation

Feature profile class

Description

Scatter plot of a feature against measurement order with limits for samples and quality control samples.

Usage

feature_profile(
  run_order,
  qc_label,
  qc_column,
  colour_by,
  feature_to_plot,
  ...
)

Arguments

run_order

the sample_meta column containing the measurement order of the samples

qc_label

the label used to identify QC samples

qc_column

the sample_meta column containing the QC labels

colour_by

the sample_meta column to use to colour the plot

feature_to_plot

the column id of the feature to plot

...

additional slots and values passed to struct_class

Value

struct object

Examples

D = MTBLS79_DatasetExperiment()
C = feature_profile(run_order='sample_order',
    qc_label='QC',
    qc_column='class',
    colour_by='class',
    feature_to_plot=1)
chart_plot(C,D)


[Package structToolbox version 1.0.1 Index]