BASiCSSimulate {splatter} | R Documentation |
Simulate counts using the BASiCS method.
BASiCSSimulate(params = newBASiCSParams(), verbose = TRUE, ...)
params |
BASiCSParams object containing simulation parameters. |
verbose |
logical. Whether to print progress messages |
... |
any additional parameter settings to override what is provided in
|
This function is just a wrapper around BASiCS_Sim
that
takes a BASiCSParams
, runs the simulation then converts the
output to a SingleCellExperiment
object.
See BASiCS_Sim
for more details of how the simulation
works.
SingleCellExperiment containing simulated counts
Vallejos CA, Marioni JC, Richardson S. BASiCS: Bayesian Analysis of Single-Cell Sequencing data. PLoS Computational Biology (2015).
Paper: 10.1371/journal.pcbi.1004333
Code: https://github.com/catavallejos/BASiCS
if (requireNamespace("BASiCS", quietly = TRUE)) { sim <- BASiCSSimulate() }