plot.sitePath {sitePath} | R Documentation |
Visualize the sitePath
object which is the basic unit of the
result of fixationSites
and multiFixationSites
.
## S3 method for class 'sitePath' plot(x, y = NULL, showTips = FALSE, ...)
x |
A |
y |
A |
showTips |
Whether to plot the tip labels. The default is |
... |
Arguments in |
The function only makes plot and returns no value
(It behaviors like the generic plot
function).
data(zikv_align_reduced) data(zikv_tree_reduced) tree <- addMSA(zikv_tree_reduced, alignment = zikv_align_reduced) paths <- lineagePath(tree) fixations <- fixationSites(paths) plot(fixations[[1]])