annotateModule {rTRM}R Documentation

Annotate a network module with information

Description

Uses information about expression, enrichment and parent PPI network to annotate a subgraph.

Usage

annotateModule(g, enrich, trm, targets, ppi, exprs, tfs)

Arguments

g

graph to annotate in igraph format.

enrich

list of enriched transcription factors (or motifs).

trm

TRM to compare with (to identify bridges).

targets

list of target transcription factors (typically those with ChIP-seq data).

ppi

parent PPI network (to check membership of nodes).

exprs

list of entrezgene ids representing expressed genes.

tfs

Author(s)

Diego Diez


[Package rTRM version 1.26.0 Index]