mostStable {pulsedSilac} | R Documentation |
Finds which are the most stable proteins/peptides across the entire experiment. These proteins/peptides can be used to estimate the cell growth of each condition.
mostStable(x, ...) ## S4 method for signature 'SilacProteinExperiment' mostStable(x, assayName, n, conditionCol) ## S4 method for signature 'SilacPeptideExperiment' mostStable(x, assayName, n, conditionCol) ## S4 method for signature 'SilacProteomicsExperiment' mostStable(x, assayName, n, mode, conditionCol)
x |
A |
... |
Unused. |
assayName |
Name of the assay to use. |
n |
A |
conditionCol |
A |
mode |
A |
Proteins/peptides that are not found in all timepoints and in all conditions are not considered. The stability is based on ranking heavy label incorporation for each timepoint; therefore, lower values are correlated to higher stability.
A SilacProteinExperiment
, SilacPeptideExperiment
or a
SilacProteomicsExperiment
object with the n most stable
proteins/peptides.
data('mefPE') mostStable(mefPE, assayName = 'fraction', n = 50)