defaults {iSEE} | R Documentation |
These default-creating functions are deprecated and should be replaced by constructor calls.
redDimPlotDefaults(se, number) featAssayPlotDefaults(se, number) colDataPlotDefaults(se, number) rowStatTableDefaults(se, number) colStatTableDefaults(se, number) rowDataPlotDefaults(se, number) sampAssayPlotDefaults(se, number) heatMapPlotDefaults(se, number)
se |
A SummarizedExperiment object. |
number |
Integer scalar specfiying the number of panels to use. |
The iSEE
function will attempt to translate the default parameters here into a
the new S4 framework based on the Panel and its subclasses.
A DataFrame containing default settings for parameters of each of number
feature assay panels.
Aaron Lun
example(SingleCellExperiment, echo=FALSE) # mock up 'sce'. redDimPlotDefaults(sce, n=1) featAssayPlotDefaults(sce, n=1) colDataPlotDefaults(sce, n=1) rowStatTableDefaults(sce, n=1) colStatTableDefaults(sce, n=1) rowDataPlotDefaults(sce, n=1) sampAssayPlotDefaults(sce, n=1) heatMapPlotDefaults(sce, n=1)