defaults {iSEE}R Documentation

Deprecated default functions

Description

These default-creating functions are deprecated and should be replaced by constructor calls.

Usage

redDimPlotDefaults(se, number)

featAssayPlotDefaults(se, number)

colDataPlotDefaults(se, number)

rowStatTableDefaults(se, number)

colStatTableDefaults(se, number)

rowDataPlotDefaults(se, number)

sampAssayPlotDefaults(se, number)

heatMapPlotDefaults(se, number)

Arguments

se

A SummarizedExperiment object.

number

Integer scalar specfiying the number of panels to use.

Details

The iSEE function will attempt to translate the default parameters here into a the new S4 framework based on the Panel and its subclasses.

Value

A DataFrame containing default settings for parameters of each of number feature assay panels.

Author(s)

Aaron Lun

Examples

example(SingleCellExperiment, echo=FALSE) # mock up 'sce'.
redDimPlotDefaults(sce, n=1)
featAssayPlotDefaults(sce, n=1)
colDataPlotDefaults(sce, n=1)

rowStatTableDefaults(sce, n=1)
colStatTableDefaults(sce, n=1)

rowDataPlotDefaults(sce, n=1)
sampAssayPlotDefaults(sce, n=1)
heatMapPlotDefaults(sce, n=1)

[Package iSEE version 2.0.0 Index]