gsets {hypeR}R Documentation

A genesets object

Description

A genesets object

A genesets object

Arguments

genesets

A named list of genesets

name

A character vector describing source of genesets

version

A character vector describing versioning

Methods

print(gsets) prints geneset information.

gsets$reduce(background) reduces genesets to a background distribution of symbols.

See Also

rgsets

Methods

Public methods


Method new()

Usage
gsets$new(genesets, name = "", version = "", quiet = FALSE)

Method print()

Usage
gsets$print(...)

Method reduce()

Usage
gsets$reduce(background)

Method clone()

The objects of this class are cloneable with this method.

Usage
gsets$clone(deep = FALSE)
Arguments
deep

Whether to make a deep clone.

Examples

genesets <- list("GSET1" = c("GENE1", "GENE2", "GENE3"),
                 "GSET2" = c("GENE4", "GENE5", "GENE6"),
                 "GSET3" = c("GENE7", "GENE8", "GENE9"))

gsets_obj <- gsets$new(genesets, name="example", version="v1.0")
print(gsets_obj)


[Package hypeR version 1.4.0 Index]