hyp_to_table {hypeR} | R Documentation |
Export hyp/multihyp object to table
hyp_to_table(hyp_obj, file_path, sep = "\t", cols = NULL, version = TRUE)
hyp_obj |
A hyp or multihyp object |
file_path |
A file path for hyp objects and directory for multihyp objects |
sep |
The field separator string |
cols |
Dataframe columns to include |
version |
Add header with versioning information |
genesets <- msigdb_gsets("Homo sapiens", "C2", "CP:KEGG") signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502", "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC", "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2") hyp_obj <- hypeR(signature, genesets, background=2522) hyp_to_table(hyp_obj, file_path="pathways.txt")