rgsets {hypeR} | R Documentation |
A relational genesets object
A relational genesets object
A list of genesets where list names refers to geneset labels and values are geneset members represented as a vector
A data frame of labeled nodes e.g.
label | ||
G1 | Geneset 1 | |
G2 | Geneset 2 | |
G3 | Geneset 3 | |
A data frame of directed edges
from | to | |
G1 | G2 | |
G1 | G3 | |
A character vector describing source of genesets
A character vector describing versioning
print(rgsets)
shows some information about the object data
rgsets$subset(labels)
returns an rgsets object subsetted
on geneset labels
gsets
pvector
new()
rgsets$new(genesets, nodes, edges, name = "", version = "", quiet = FALSE)
print()
rgsets$print(...)
reduce()
rgsets$reduce(background)
subset()
rgsets$subset(labels)
clone()
The objects of this class are cloneable with this method.
rgsets$clone(deep = FALSE)
deep
Whether to make a deep clone.
testdat <- readRDS(file.path(system.file("extdata", package="hypeR"), "testdat.rds")) rgsets <- rgsets$new(genesets=testdat$genesets, nodes=testdat$nodes, edges=testdat$edges, name="Example", version="v1.0")