goSTAG-package {goSTAG} | R Documentation |
A tool to use GO Subtrees to Tag and Annotate Genes within a set.
Package: | goSTAG |
Type: | Package |
Brian D. Bennett
Pierre R. Bushel
Bennett BD and Bushel PR. goSTAG: Gene Ontology Subtrees to Tag and Annotate Genes within a set. Source Code Biol Med. 2017 Apr 13.
data( goSTAG_example_gene_lists ) go_terms <- loadGOTerms() enrichment_matrix <- performGOEnrichment( goSTAG_example_gene_lists, go_terms ) hclust_results <- performHierarchicalClustering( enrichment_matrix ) clusters <- groupClusters( hclust_results ) cluster_labels <- annotateClusters( clusters ) plotHeatmap( enrichment_matrix, hclust_results, clusters, cluster_labels )