plot_ora {fcoex} | R Documentation |
Creates a bar plot with the results of module overrepresentation analysis
plot_ora(fc, n = 10, pv_cut = 0.05, ...) ## S4 method for signature 'fcoex' plot_ora(fc, n = 10, pv_cut = 0.05, ...)
fc |
Object of class |
n |
number of enrichments to show |
pv_cut |
p-value significance cutoff. Default is 0.05. |
... |
parameters to plot_ora_single |
This function was copied and adapted from the CEMiTool package. The visualization in this function is derivative of the intelectual work of CEMiTool's authors.
Object of class fcoex
with ORA plots
data("fc") gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool") gmt_in <- pathwayPCA::read_gmt(gmt_fname) fc <- mod_ora(fc, gmt_in) fc <- plot_ora(fc)