Edges_Diseases_obj {bioCancer} | R Documentation |
get Edges dataframe for Gene/Disease association from geNetClassifier
Edges_Diseases_obj(genesclassdetails)
genesclassdetails |
a dataframe from geNetClassifier |
A data frame with egdes attributes
GenesClassDetails <- structure(list(Genes = c("FANCF", "MLH1", "MSH2", "ATR", "PARP1", "CHEK2", "RAD51"), ranking = c(1L, 1L, 1L, 2L, 3L, 1L, 2L), class = c("brca_tcga", "gbm_tcga", "lihc_tcga", "lihc_tcga", "lihc_tcga", "lusc_tcga", "lusc_tcga"), postProb = c(1, 0.99, 1, 0.99, 0.99, 1, 0.98), exprsMeanDiff = c(180, 256, -373, -268, -1482, 258, 143), exprsUpDw = c("UP", "UP", "DOWN", "DOWN", "DOWN", "UP", "UP")), .Names = c("Genes", "ranking", "class", "postProb", "exprsMeanDiff", "exprsUpDw"), class = "data.frame", row.names = c(NA,-7L)) Ed_Diseases_obj <- Edges_Diseases_obj(genesclassdetails=GenesClassDetails)