artmsIsSpeciesSupported {artMS} | R Documentation |
Check if a species is supported and available
Description
Given a species name, it checkes whether is supported, and
if supported, check whether the annotation package is installed.
Usage
artmsIsSpeciesSupported(species, verbose = TRUE)
Arguments
species |
(char) The species name. Species currently supported
as part of artMS:
And the following species can be used as well, but the user needs to
install the corresponding org.db package:
ANOPHELES (install.packages(org.Ag.eg.db) )
BOVINE (install.packages(org.Bt.eg.db) )
WORM (install.packages(org.Ce.eg.db) )
CANINE (install.packages(org.Cf.eg.db) )
FLY (install.packages(org.Dm.eg.db) )
ZEBRAFISH (install.packages(org.Dr.eg.db) )
CHICKEN (install.packages(org.Gg.eg.db) )
RHESUS (install.packages(org.Mmu.eg.db) )
CHIMP (install.packages(org.Pt.eg.db) )
RAT (install.packages(org.Rn.eg.db) )
YEAST (install.packages(org.Sc.sgd.db) )
PIG (install.packages(org.Ss.eg.db) )
XENOPUS (install.packages(org.Xl.eg.db) )
|
verbose |
(logical) TRUE (default) shows function messages
|
Value
(string) Name of the package for the given species
Examples
# Should return TRUE
artmsIsSpeciesSupported(species = "HUMAN")
artmsIsSpeciesSupported(species = "CHIMP")
[Package
artMS version 1.6.5
Index]