.hisat2Bin {Rhisat2} | R Documentation |
Adapted from the Rbowtie package
.hisat2Bin(bin = c("hisat2", "hisat2-build"), args = "", execute = TRUE)
bin |
The name of the binary, either hisat2 or hisat2-build. |
args |
A character string containing the arguments that will be passed to the binary. |
execute |
Logical scalar, whether to execute the command. If FALSE, return a string with the shell command. |
If execute
is TRUE, returns the console output of running the
hisat2 command. If execute
is FALSE, returns the shell command.