genWegoFile {PloGO2}R Documentation

Function to generate a format in Wego native style from a list of Uniprot identifiers

Description

Connects to the Uniprot Biomart using functionality from the biomaRt package, downloads GO information and organizes it as needed.

Usage

genWegoFile(IDList, fname = "Wego.txt", database = "uniprot", outFolder=tempdir())

Arguments

IDList

A list of ID's, either Ensembl or Uniprot.

fname

The name of the text file to be outputed.

database

"ensembl" or "uniprot".

outFolder

The output files folder

Value

File path of generated Wego files

Author(s)

D. Pascovici

Examples

v <- c("Q9HWC9","Q9HWD0","Q9I4N8","Q9HW18","Q9HWC9","Q9HWD0")

## Not run: genWegoFile(v, fname = "F1.txt")

[Package PloGO2 version 1.0.0 Index]