plotAbundanceBar {PloGO2} | R Documentation |
Plot the aggregated abundance barplot for all files/clusters
plotAbundanceBar(mat.abundance, mat.counts, min.count=5)
mat.abundance |
A matrix of abundance |
mat.counts |
A matrix of the counts |
min.count |
The cutoff for the minimum counts to be included |
None returned, generate a barplot.
J.Wu
path <- system.file("files", package = "PloGO2") # run PloPathway with list of id's, data file and reference res <- PloPathway( zipFile=paste(path, "PWFiles.zip", sep="/"), reference="Alldata", data.file.name = paste(path, "Abundance_data.csv", sep="/"), datafile.ignore.cols = 1) png("AbundanceBarplot.png", 2500, 2000, res=300) par(mar=c(4,10,4,14)) plot.res <- plotAbundanceBar(res$aggregatedAbundance, res$Counts) dev.off()