candidate.region {PICS}R Documentation

Identify candidate regions

Description

Identify candidate regions from paired-end sequencing data.

Usage

candidate.region(PE.RD, islandDepth, min_cut, max_cut)

Arguments

PE.RD

A character. File including sequenced pairs.

islandDepth

A numeric. The minimum depth of candidate regions.

min_cut

A numeric. The minimum region length.

max_cut

A numeric. The maximum region length.


[Package PICS version 2.32.0 Index]