picsFDR {PICS} | R Documentation |
Estimate the FDR
Description
Estimate the false detection rate for an object of class pics
or
picsList
.
Usage
picsFDR(
picsIP,
picsCont,
filter = list(delta = c(0, Inf), se = c(0, Inf), sigmaSqF = c(0, Inf), sigmaSqR = c(0,
Inf))
)
Arguments
picsIP |
An object of class pics or picsList containing
the informations for the IP reads.
|
picsCont |
An object of class pics or picsList containing
the informations for the control reads
|
filter |
A list of ranges for filtering regions based on PICS
parameters. By default filter is set to NULL and all regions are used.
delta: Length of the binding sites
se: Standard error
sigmaSqF: Forward peak variance
sigmaSqR: Reverse peak variance
|
Value
A data.frame
with the following columns: FDR, score, N
See Also
picsList pics
[Package
PICS version 2.32.0
Index]