thresholdLinkDf {MetCirc} | R Documentation |
Threshold a link data frame
thresholdLinkDf(link0df, lower=0.75, upper=1)
link0df |
'data.frame', a link data frame that gives per each row information on linked features |
lower |
'numeric', threshold value for similarity values, below this value linked features will not be returned |
upper |
'numeric', threshold value for similarity values, above this value linked features will not be returned |
'lower' and 'upper' are numerical values and truncates mass spectra based on their similarity values.
thresholdLinkDf
returns a data frame that gives per each row
information on linked features which are linked within certain thresholds
Thomas Naake, thomasnaake@googlemail.com
data("spectra", package="MetCirc") data("similarityMat", package="MetCirc") link0df <- createLink0df(similarityMatrix=similarityMat, spectra_tissue, condition=c("SPL", "LIM", "ANT", "STY")) thresholdLinkDf(link0df=link0df, lower=0.5, upper=1)