cutLinkDf {MetCirc} | R Documentation |
Create a cut link data frame
cutLinkDf(linkDf, type=c("all", "inter", "intra"))
linkDf |
'data.frame', that gives per each row information on linked features |
type |
'character', one of "all", "inter" or "intra" |
This function is used to truncate features from linkDf. If type="all", linkDf will not be changed; if type="inter" the returned linkDf will only contain entries of links which are between groups and not inside groups; contrary to that, if type="intra" the returned linkDf will only contain entries of links which are inside groups and not between groups.
cutLinkDf returns a data.frame that gives per each row information on linked features
Thomas Naake, thomasnaake@googlemail.com
data("spectra", package="MetCirc") data("similarityMat", package="MetCirc") linkDf <- createLinkDf(similarityMatrix=similarityMat, spectra=spectra_tissue, condition=c("SPL", "LIM", "ANT", "STY"), lower=0.75, upper=1) cutLinkDf(linkDf=linkDf, type="all")