printInformationSelect {MetCirc} | R Documentation |
Displays information on connected features of selected features.
printInformationSelect(select, spectra=NULL, linkDfInd, linkDf, similarityMatrix, roundDigits=2)
select |
'character', obtained from groupname, 'character' of selected feature |
spectra |
'Spectra' object containing spectra that are compared in 'similarityMatrix' |
linkDfInd |
'numeric' indices of selected features |
linkDf |
'data.frame' that contains information of linked features for given thresholds |
similarityMatrix |
'matrix' that is used to get information on the degree of similarity, 'similarityMat' is an ordered version of a similarity matrix, see '?createOrderedSimMat' |
roundDigits |
'numeric', how many digits should be displayed? |
'printInformationSelect' is for internal use.
'character' that is in HTML format
Thomas Naake, thomasnaake@googlemail.com
data("spectra", package="MetCirc") similarityMat <- compare_Spectra(spectra_tissue[1:10], fun=normalizeddotproduct, binSize=0.01) linkDf <- createLinkDf(similarityMatrix=similarityMat, spectra=spectra_tissue[1:10], condition=c("SPL", "LIM", "ANT", "STY"), lower=0.5, upper=1) ## cut link data.frame (here: only display links between groups) linkDf_cut <- cutLinkDf(linkDf, type="inter") groupname <- c(as.character(linkDf_cut[, "spectrum1"]), as.character(linkDf_cut[, "spectrum2"])) groupname <- unique(groupname) ## arbitrarily select a feature ind <- 2 linkDfInds <- getLinkDfIndices(groupname[ind], linkDf_cut) MetCirc:::printInformationSelect(groupname[ind], spectra=spectra_tissue[1:10], linkDfInd=linkDfInds, linkDf=linkDf_cut, similarityMatrix=similarityMat)