is.pp {GenomicInteractions}R Documentation

Interaction Type Helpers

Description

Functions to classify interactions within GInteractions objects.

Usage

is.pp(GIObject)

is.pd(GIObject)

is.pt(GIObject)

is.dd(GIObject)

is.dt(GIObject)

is.tt(GIObject)

isInteractionType(GIObject, x, y)

is.trans(GIObject)

is.cis(GIObject)

## S4 method for signature 'GInteractions'
is.pp(GIObject)

## S4 method for signature 'GInteractions'
is.pd(GIObject)

## S4 method for signature 'GInteractions'
is.pt(GIObject)

## S4 method for signature 'GInteractions'
is.dd(GIObject)

## S4 method for signature 'GInteractions'
is.dt(GIObject)

## S4 method for signature 'GInteractions'
is.tt(GIObject)

## S4 method for signature 'GInteractions'
isInteractionType(GIObject, x, y)

## S4 method for signature 'GInteractions'
is.trans(GIObject)

## S4 method for signature 'GInteractions'
is.cis(GIObject)

Arguments

GIObject

A GInteractions object

x, y

Names of annotated node classes

Value

A logical vector

Examples

data(hic_example_data)
table(is.cis(hic_example_data))
sum(interactionCounts(hic_example_data))


[Package GenomicInteractions version 1.22.0 Index]