getPATHList {GeneAnswers}R Documentation

Retrieve KEGG categories containing given genes

Description

Function to retrieve KEGG category IDs containing given genes.

Usage

getPATHList(geneVector, lib)

Arguments

geneVector

an Entrez gene IDs vector

lib

annotation library to be used to retrieve KEGG IDs.

Details

The current version only supports Bioconductor team maintained annotation libraries, like 'org.Bt.eg.db', 'org.Ce.eg.db', 'org.Cf.eg.edu', 'org.Dm.eg.db', 'org.Dr.eg.db', 'org.EcK12.eg.db', 'org.EcSakai.eg.db', 'org.Gg.eg.db', 'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Rn.eg.db' and 'org.Ss.eg.db'.

Value

return a KEGG genes ID list, names of the list are KEGG IDs and elements are genes IDs.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

getCategoryList

Examples

a <- getPATHList(c('56458', '16590'), 'org.Mm.eg.db')
length(a)

[Package GeneAnswers version 2.30.0 Index]