getVariantSet {GA4GHclient}R Documentation

getVariantSet function.

Description

Get a variant set by its ID.

Usage

getVariantSet(host, variantSetId, asVCFHeader = TRUE)

Arguments

host

URL of GA4GH API data server.

variantSetId

The ID of the VariantSet to be retrieved.

asVCFHeader

If TRUE the function will return an VCFHeader object (default), otherwise it will return an DataFrame.

Details

This function requests GET host/variantsets/variantSetId.

Value

DataFrame object. It can be converted into VCFHeader object.

See Also

DataFrame, searchVariantSets, VCFHeader, makeVCFHeaderFromGA4GHResponse

Examples

host <- "http://1kgenomes.ga4gh.org/"
## Not run: 
datasetId <- searchDatasets(host, nrows = 1)$id
variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id
getVariantSet(host, variantSetId)

getVariantSet(host, variantSetId, asVCF = FALSE)

## End(Not run)

[Package GA4GHclient version 1.12.0 Index]