volcanoPlot {Doscheda} | R Documentation |
Volcano plots designed to be run on objects of class 'ChemoProtSet' when a linear model has been applied.
volcanoPlot(x, coefficient = "slope", avExprs = 0.2, pVal = 0.05, ...) ## S4 method for signature 'ChemoProtSet' volcanoPlot(x, coefficient = "slope", avExprs = 0.2, pVal = 0.05, ...)
x |
object of class 'ChemoProtSet' |
coefficient |
coefficient of linear model to be plotted ('slope','intercept','quadratic') |
avExprs |
average expression cutoff |
pVal |
p-value cut-off |
... |
other plotting options |
volcano plot for objects of class ChemoProtSet
ex <- processedExample ex <- runNormalisation(ex) ex <- fitModel(ex) volcanoPlot(ex)