getTagMatrix {ChIPseeker}R Documentation

getTagMatrix

Description

calculate the tag matrix

Usage

getTagMatrix(peak, weightCol = NULL, windows, flip_minor_strand = TRUE)

Arguments

peak

peak file or GRanges object

weightCol

column name of weight, default is NULL

windows

a collection of region with equal size, eg. promoter region.

flip_minor_strand

whether flip the orientation of minor strand

Value

tagMatrix


[Package ChIPseeker version 1.24.0 Index]