Response {COMPASS}R Documentation

Compute a response probability from COMPASS mcmc samples.

Description

Compute a response probability based on the selected markers, evaluating the probability that a subject exhibits a response of size degree or greater. i.e., the probability of at least degree markers exhibiting an antigen specific response.

Usage

Response(x, markers, degree)

## S3 method for class 'COMPASSResult'
Response(x, markers = NULL, degree = 1)

Arguments

x

a COMPASSResult object.

markers

a vector of marker names.

degree

the numeric degree of functionality to test.

Details

The response is computed from the sampled Gamma matrix, subsetting on the selected markers, and

Value

A vector of response probabilities for each subject.

Examples

Response(CR, markers = c("M1","M2","M3"), degree = 2)

[Package COMPASS version 1.26.0 Index]