cirPlot4pathway {BioMM}R Documentation

Circular plot for a set of pathways

Description

Plot the individual CpGs within a given set of pathways. The significance of the CpGs are illustrated by the negative log P value.

Usage

cirPlot4pathway(datalist, topPathID, core = MulticoreParam(),
  fileName = NULL)

Arguments

datalist

The input data list containing ordered collections of matrices.

topPathID

A predefined pathway IDs.

core

The number of cores used for computation. (Default: 10)

fileName

The plot file name. (Default: 'cpgTopGOplot.png')

Details

Top 10 or 20 pathways are usually suggested to be visualized.

Value

An output image file.

See Also

omics2pathlist.


[Package BioMM version 1.4.0 Index]