This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.
Bioconductor version: 3.10
Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.
Author: Davide Risso [aut, cre, cph], Michael Cole [aut], Aaron Lun [ctb]
Maintainer: Davide Risso <risso.davide at gmail.com>
Citation (from within R,
enter citation("scRNAseq")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("scRNAseq")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scRNAseq")
HTML | R Script | User's Guide |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData |
Version | 2.0.2 |
License | CC0 |
Depends | SingleCellExperiment |
Imports | SummarizedExperiment, S4Vectors, BiocGenerics, ExperimentHub |
LinkingTo | |
Suggests | BiocStyle, AnnotationHub, AnnotationDbi, knitr, rmarkdown, BiocFileCache, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | batchelor, clusterExperiment, iSEE, scater, scFeatureFilter, scone, scran, SingleCellExperiment, singleCellTK, SingleR, SummarizedBenchmark, zinbwave |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | scRNAseq_2.0.2.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/scRNAseq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scRNAseq |
Package Short Url | https://bioconductor.org/packages/scRNAseq/ |
Package Downloads Report | Download Stats |
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