This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TENxBUSData.
Bioconductor version: 3.10
Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.
Author: Lambda Moses [aut, cre]
Maintainer: Lambda Moses <dlu2 at caltech.edu>
Citation (from within R,
enter citation("TENxBUSData")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TENxBUSData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENxBUSData")
HTML | R Script | Downloading BUS data |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData |
Version | 1.0.0 |
License | BSD_2_clause + file LICENSE |
Depends | |
Imports | ExperimentHub, AnnotationHub, utils, BiocGenerics |
LinkingTo | |
Suggests | knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | https://github.com/BUStools/TENxBUSData |
BugReports | https://github.com/BUStools/TENxBUSData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | BUSpaRse |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TENxBUSData_1.0.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/TENxBUSData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENxBUSData |
Package Short Url | https://bioconductor.org/packages/TENxBUSData/ |
Package Downloads Report | Download Stats |
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