JctSeqData

DOI: 10.18129/B9.bioc.JctSeqData    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see JctSeqData.

Example Junction Count data for use with JunctionSeq

Bioconductor version: 3.10

Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.

Author: Stephen Hartley [aut, cre] (PhD)

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("JctSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JctSeqData")

 

PDF		Example Walkthrough
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData
Version	1.16.0
License	file LICENSE
Depends	R (>= 3.3)
Imports
LinkingTo
Suggests	knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq
SystemRequirements
Enhances
URL	http://hartleys.github.io/JunctionSeq/
BugReports	http://github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me
Suggests Me	JunctionSeq
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	JctSeqData_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/JctSeqData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/JctSeqData
Package Short Url	https://bioconductor.org/packages/JctSeqData/
Package Downloads Report	Download Stats