This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see trackViewer.
Bioconductor version: 3.10
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
Author: Jianhong Ou and Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
Citation (from within R,
enter citation("trackViewer")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("trackViewer")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("trackViewer")
HTML | R Script | trackViewer Vignette |
Reference Manual | ||
Text | NEWS |
biocViews | Software, Visualization |
Version | 1.22.1 |
In Bioconductor since | BioC 2.14 (R-3.1) (6 years) |
License | GPL (>= 2) |
Depends | R (>= 3.1.0), grDevices, methods, GenomicRanges, grid |
Imports | GenomeInfoDb, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, S4Vectors, rtracklayer, BiocGenerics, scales, tools, IRanges, AnnotationDbi, grImport, htmlwidgets, plotrix, Rgraphviz, InteractionSet, graph, utils |
LinkingTo | |
Suggests | biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr, htmltools |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | NADfinder |
Suggests Me | ATACseqQC, ChIPpeakAnno |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | trackViewer_1.22.1.tar.gz |
Windows Binary | trackViewer_1.22.1.zip |
Mac OS X 10.11 (El Capitan) | trackViewer_1.22.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/trackViewer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/trackViewer |
Package Short Url | https://bioconductor.org/packages/trackViewer/ |
Package Downloads Report | Download Stats |
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