This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see synergyfinder.
Bioconductor version: 3.10
Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.
Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>, Shuyu Zheng <shuyu.zheng at helsinki.fi>
Maintainer: Shuyu Zheng <shuyu.zheng at helsinki.fi>
Citation (from within R,
enter citation("synergyfinder")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("synergyfinder")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("synergyfinder")
R Script | synergyfinder | |
Reference Manual | ||
Text | NEWS |
biocViews | Software, StatisticalMethod |
Version | 2.0.12 |
In Bioconductor since | BioC 3.4 (R-3.3) (3.5 years) |
License | Mozilla Public License 2.0 |
Depends | R (>= 3.6.0), methods |
Imports | drc (>= 2.5-12), reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), grid (>= 3.2.4), lattice (>= 0.20-33), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0) |
LinkingTo | |
Suggests | knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | synergyfinder_2.0.12.tar.gz |
Windows Binary | synergyfinder_2.0.12.zip |
Mac OS X 10.11 (El Capitan) | synergyfinder_2.0.12.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/synergyfinder |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/synergyfinder |
Package Short Url | https://bioconductor.org/packages/synergyfinder/ |
Package Downloads Report | Download Stats |
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