This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see spotSegmentation.
Bioconductor version: 3.10
Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.
Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington
Maintainer: Chris Fraley <fraley at stat.washington.edu>
Citation (from within R,
enter citation("spotSegmentation")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("spotSegmentation")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | Microarray, Preprocessing, QualityControl, Software, TwoChannel |
Version | 1.60.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 15 years) |
License | GPL (>= 2) |
Depends | R (>= 2.10), mclust |
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URL | http://www.stat.washington.edu/fraley |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | spotSegmentation_1.60.0.tar.gz |
Windows Binary | spotSegmentation_1.60.0.zip |
Mac OS X 10.11 (El Capitan) | spotSegmentation_1.60.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/spotSegmentation |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spotSegmentation |
Package Short Url | https://bioconductor.org/packages/spotSegmentation/ |
Package Downloads Report | Download Stats |
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