This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see sojourner.
Bioconductor version: 3.10
Single molecule tracking has evolved as a novel new approach complementing genomic sequencing, it reports live biophysical properties of molecules being investigated besides properties relating their coding sequence; here we provided "sojourner" package, to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data.
Author: Sheng Liu [aut], Sun Jay Yoo [aut], Xiao Na Tang [aut], Young Soo Sung [aut], Carl Wu [aut], Anand Ranjan [ctb], Vu Nguyen [ctb], Sojourner Developer [cre]
Maintainer: Sojourner Developer <sojourner.developer at outlook.com>
Citation (from within R,
enter citation("sojourner")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("sojourner")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sojourner")
HTML | R Script | Sojourner: an R package for statistical analysis of single molecule trajectories |
Reference Manual | ||
Text | NEWS |
biocViews | Software, Technology, WorkflowStep |
Version | 1.0.2 |
In Bioconductor since | BioC 3.10 (R-3.6) (< 6 months) |
License | Artistic-2.0 |
Depends | |
Imports | ggplot2, dplyr, reshape2, gridExtra, EBImage, MASS, R.matlab, Rcpp, boot, fitdistrplus, mclust, minpack.lm, mixtools, mltools, nls2, plyr, rtiff, sampSurf, scales, shiny, shinyjs, sp, truncnorm, utils, stats, pixmap, rlang, graphics, grDevices, grid, compiler, lattice |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | https://github.com/sheng-liu/sojourner |
BugReports | https://github.com/sheng-liu/sojourner/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | sojourner_1.0.2.tar.gz |
Windows Binary | sojourner_1.0.2.zip |
Mac OS X 10.11 (El Capitan) | sojourner_1.0.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sojourner |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sojourner |
Package Short Url | https://bioconductor.org/packages/sojourner/ |
Package Downloads Report | Download Stats |
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