This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see motifRG.
Bioconductor version: 3.10
Tools for discriminative motif discovery using regression methods
Author: Zizhen Yao
Maintainer: Zizhen Yao <yzizhen at fhcrc.org>
Citation (from within R,
enter citation("motifRG")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("motifRG")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("motifRG")
R Script | motifRG: regression-based discriminative motif discovery | |
Reference Manual |
biocViews | MotifDiscovery, Software, Transcription |
Version | 1.30.0 |
In Bioconductor since | BioC 2.10 (R-2.15) (8 years) |
License | Artistic-2.0 |
Depends | R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19 |
Imports | Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector |
LinkingTo | |
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Depends On Me | RCAS |
Imports Me | |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | motifRG_1.30.0.tar.gz |
Windows Binary | motifRG_1.30.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | motifRG_1.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/motifRG |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/motifRG |
Package Short Url | https://bioconductor.org/packages/motifRG/ |
Package Downloads Report | Download Stats |
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