This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see microbiome.
Bioconductor version: 3.10
Utilities for microbiome analysis.
Author: Leo Lahti [aut, cre], Sudarshan Shetty [aut]
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R,
enter citation("microbiome")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("microbiome")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microbiome")
HTML | R Script | microbiome R package |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | Clustering, ImmunoOncology, Metagenomics, Microbiome, Sequencing, Software, SystemsBiology |
Version | 1.8.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (2.5 years) |
License | BSD_2_clause + file LICENSE |
Depends | R (>= 3.3.0), phyloseq, ggplot2 |
Imports | dplyr, reshape2, Rtsne, scales, stats, tidyr, utils, vegan |
LinkingTo | |
Suggests | BiocGenerics, BiocStyle, Cairo, knitcitations, knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | http://microbiome.github.io/microbiome |
BugReports | https://github.com/microbiome/microbiome/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | microbiome_1.8.0.tar.gz |
Windows Binary | microbiome_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | microbiome_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/microbiome |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microbiome |
Package Short Url | https://bioconductor.org/packages/microbiome/ |
Package Downloads Report | Download Stats |
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