This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see flipflop.
Bioconductor version: 3.10
Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data. It takes an alignment file in SAM format as input. It can also discover transcripts from several samples simultaneously, increasing statistical power.
Author: Elsa Bernard, Laurent Jacob, Julien Mairal and Jean-Philippe Vert
Maintainer: Elsa Bernard <elsa.bernard at mines-paristech.fr>
Citation (from within R,
enter citation("flipflop")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("flipflop")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | AlternativeSplicing, RNASeq, RNASeqData, Regression, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (6.5 years) |
License | GPL-3 |
Depends | R (>= 2.10.0) |
Imports | methods, Matrix, IRanges, GenomicRanges, parallel |
LinkingTo | |
Suggests | GenomicFeatures |
SystemRequirements | GNU make |
Enhances | |
URL | http://cbio.ensmp.fr/flipflop |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | flipflop_1.24.0.zip |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/flipflop |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flipflop |
Package Short Url | https://bioconductor.org/packages/flipflop/ |
Package Downloads Report | Download Stats |
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