consensus

DOI: 10.18129/B9.bioc.consensus    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see consensus.

Cross-platform consensus analysis of genomic measurements via interlaboratory testing method

Bioconductor version: 3.10

An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.

Author: Tim Peters

Maintainer: Tim Peters <t.peters at garvan.org.au>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("consensus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("consensus")

 

PDF	R Script	Fitting and visualising row-linear models with \texttt{consensus}
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, GeneExpression, ImmunoOncology, Microarray, QualityControl, RNASeq, Regression, Software
Version	1.4.0
In Bioconductor since	BioC 3.8 (R-3.5) (1.5 years)
License	BSD_3_clause + file LICENSE
Depends	R (>= 3.5), RColorBrewer
Imports	matrixStats, gplots, grDevices, methods, graphics, stats, utils
LinkingTo
Suggests	knitr, RUnit, rmarkdown, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	consensus_1.4.0.tar.gz
Windows Binary	consensus_1.4.0.zip
Mac OS X 10.11 (El Capitan)	consensus_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/consensus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/consensus
Package Short Url	https://bioconductor.org/packages/consensus/
Package Downloads Report	Download Stats