This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see cobindR.
Bioconductor version: 3.10
Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes
Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann
Maintainer: Manuela Benary <manuela.benary at cms.hu-berlin.de>
Citation (from within R,
enter citation("cobindR")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("cobindR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cobindR")
R Script | Using cobindR | |
Reference Manual | ||
Text | NEWS |
biocViews | CellBiology, ChIPSeq, MultipleComparison, SequenceMatching, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (6.5 years) |
License | Artistic-2.0 |
Depends | |
Imports | methods, seqinr, yaml, rtfbs, gplots, mclust, gmp, BiocGenerics(>= 0.13.8), IRanges, Biostrings, BSgenome, biomaRt |
LinkingTo | |
Suggests | RUnit |
SystemRequirements | |
Enhances | rGADEM, seqLogo, genoPlotR, parallel, VennDiagram, RColorBrewer, vcd, MotifDb, snowfall |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | cobindR_1.24.0.tar.gz |
Windows Binary | cobindR_1.24.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | cobindR_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/cobindR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cobindR |
Package Short Url | https://bioconductor.org/packages/cobindR/ |
Package Downloads Report | Download Stats |
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