This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see SwimR.
Bioconductor version: 3.10
SwimR is an R-based suite that calculates, analyses, and plots the frequency of C. elegans swimming behavior over time. It places a particular emphasis on identifying paralysis and quantifying the kinetic elements of paralysis during swimming. Data is input to SwipR from a custom built program that fits a 5 point morphometric spine to videos of single worms swimming in a buffer called Worm Tracker.
Author: Jing Wang <jing.wang.2 at vanderbilt.edu>, Andrew Hardaway <hardawayja at gmail.com> and Bing Zhang <bing.zhang at vanderbilt.edu>
Maintainer: Randy Blakely <Randy.Blakely at vanderbilt.edu>
Citation (from within R,
enter citation("SwimR")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SwimR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SwimR")
R Script | SwimR | |
Reference Manual |
biocViews | Software, Visualization |
Version | 1.24.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (6.5 years) |
License | LGPL-2 |
Depends | R (>= 3.0.0), methods, gplots (>= 2.10.1), heatmap.plus (>= 1.3), signal (>= 0.7), R2HTML (>= 2.2.1) |
Imports | methods |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | SwimR_1.24.0.tar.gz |
Windows Binary | SwimR_1.24.0.zip |
Mac OS X 10.11 (El Capitan) | SwimR_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SwimR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SwimR |
Package Short Url | https://bioconductor.org/packages/SwimR/ |
Package Downloads Report | Download Stats |
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