This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Rhtslib.
Bioconductor version: 3.10
This package provides version 1.7 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("Rhtslib")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Rhtslib")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")
HTML | R Script | Motivation and use of Rhtslib |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, Sequencing, Software |
Version | 1.18.1 |
In Bioconductor since | BioC 3.1 (R-3.2) (5 years) |
License | LGPL (>= 2) |
Depends | |
Imports | zlibbioc |
LinkingTo | zlibbioc |
Suggests | BiocStyle, knitr |
SystemRequirements | libbz2 & liblzma & libcurl (with header files), GNU make |
Enhances | |
URL | https://github.com/Bioconductor/Rhtslib http://www.htslib.org/ |
BugReports | https://github.com/Bioconductor/Rhtslib |
Depends On Me | deepSNV |
Imports Me | deepSNV, diffHic, scPipe |
Suggests Me | |
Links To Me | ArrayExpressHTS, bamsignals, BitSeq, csaw, deepSNV, DiffBind, diffHic, h5vc, methylKit, podkat, qrqc, QuasR, Rsamtools, scPipe, seqbias, TransView, VariantAnnotation |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | Rhtslib_1.18.1.tar.gz |
Windows Binary | Rhtslib_1.18.1.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | Rhtslib_1.18.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rhtslib |
Package Short Url | https://bioconductor.org/packages/Rhtslib/ |
Package Downloads Report | Download Stats |
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