This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see IPPD.
Bioconductor version: 3.10
The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.
Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Andreas Hildebrandt <andreas.hildebrandt at uni-mainz.de>, Matthias Hein <hein at cs.uni-saarland.de>
Maintainer: Martin Slawski <ms at cs.uni-saarland.de>
Citation (from within R,
enter citation("IPPD")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("IPPD")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IPPD")
R Script | IPPD Manual | |
Reference Manual |
biocViews | Proteomics, Software |
Version | 1.34.0 |
In Bioconductor since | BioC 2.8 (R-2.13) (9 years) |
License | GPL (version 2 or later) |
Depends | R (>= 2.12.0), MASS, Matrix, XML, digest, bitops |
Imports | methods, stats, graphics |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | RforProteomics |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | IPPD_1.34.0.tar.gz |
Windows Binary | IPPD_1.34.0.zip |
Mac OS X 10.11 (El Capitan) | IPPD_1.34.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/IPPD |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IPPD |
Package Short Url | https://bioconductor.org/packages/IPPD/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: