Genominator

DOI: 10.18129/B9.bioc.Genominator    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Genominator.

Analyze, manage and store genomic data

Bioconductor version: 3.10

Tools for storing, accessing, analyzing and visualizing genomic data.

Author: James Bullard, Kasper Daniel Hansen

Maintainer: James Bullard <bullard at stat.berkeley.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Genominator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Genominator")

 

PDF	R Script	Plotting with Genominator
PDF	R Script	The Genominator User Guide
PDF	R Script	Working with the ShortRead Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.40.0
In Bioconductor since	BioC 2.5 (R-2.10) (10.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, RSQLite, DBI (>= 0.2-5), BiocGenerics(>= 0.1.0), IRanges(>= 2.5.27), GenomeGraphs
Imports	graphics, stats, utils
LinkingTo
Suggests	biomaRt, ShortRead, yeastRNASeq
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Genominator_1.40.0.tar.gz
Windows Binary	Genominator_1.40.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Genominator_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Genominator
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Genominator
Package Short Url	https://bioconductor.org/packages/Genominator/
Package Downloads Report	Download Stats