This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DEWSeq.
Bioconductor version: 3.10
Differential expression analysis of windows for next-generation sequencing data like eCLIP or iCLIP data.
Author: Sudeep Sahadevan <sahadeva at embl.de>, Thomas Schwarzl <schwarzl at embl.de>
Maintainer: Hentze bioinformatics team <biohentze at embl.de>
Citation (from within R,
enter citation("DEWSeq")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DEWSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DEWSeq")
HTML | R Script | Analyzing eCLIP/iCLIP data with DEWSeq |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | DifferentialExpression, FunctionalGenomics, GeneRegulation, Sequencing, Software |
Version | 1.0.6 |
In Bioconductor since | BioC 3.10 (R-3.6) (< 6 months) |
License | LGPL (>= 3) |
Depends | R (>= 3.6.0), R.utils, DESeq2, BiocParallel |
Imports | BiocGenerics, data.table (>= 1.11.8), GenomeInfoDb, GenomicRanges, methods, S4Vectors, SummarizedExperiment, stats, utils |
LinkingTo | |
Suggests | knitr, rmarkdown, testthat, BiocStyle, IHW |
SystemRequirements | |
Enhances | |
URL | https://github.com/EMBL-Hentze-group/DEWSeq/ |
BugReports | https://github.com/EMBL-Hentze-group/DEWSeq/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DEWSeq_1.0.6.tar.gz |
Windows Binary | DEWSeq_1.0.6.zip |
Mac OS X 10.11 (El Capitan) | DEWSeq_1.0.6.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DEWSeq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DEWSeq |
Package Short Url | https://bioconductor.org/packages/DEWSeq/ |
Package Downloads Report | Download Stats |
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