This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CellMixS.
Bioconductor version: 3.10
Evaluate Cellspecific Mixing Scores (CMS) for different batches/groups in scRNA-seq data.
Author: Almut Lütge
Maintainer: Almut Lütge <almut.luetge at uzh.ch>
Citation (from within R,
enter citation("CellMixS")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("CellMixS")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellMixS")
HTML | R Script | Explore data integration and batch effects |
Reference Manual | ||
Text | NEWS |
biocViews | BatchEffect, GeneExpression, SingleCell, Software, Transcriptomics |
Version | 1.2.6 |
In Bioconductor since | BioC 3.9 (R-3.6) (1 year) |
License | GPL (>=2) |
Depends | kSamples, R (>= 3.6) |
Imports | BiocNeighbors, ggplot2, scater, viridis, cowplot, SummarizedExperiment, SingleCellExperiment, tidyr, magrittr, dplyr, ggridges, stats, purrr, listarrays, methods, BiocParallel, BiocGenerics |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, testthat, limma |
SystemRequirements | |
Enhances | |
URL | https://github.com/almutlue/CellMixS |
BugReports | https://github.com/almutlue/CellMixS/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | CellMixS_1.2.6.tar.gz |
Windows Binary | CellMixS_1.2.6.zip |
Mac OS X 10.11 (El Capitan) | CellMixS_1.2.6.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CellMixS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CellMixS |
Package Short Url | https://bioconductor.org/packages/CellMixS/ |
Package Downloads Report | Download Stats |
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