CNVtools

DOI: 10.18129/B9.bioc.CNVtools    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CNVtools.

A package to test genetic association with CNV data

Bioconductor version: 3.10

This package is meant to facilitate the testing of Copy Number Variant data for genetic association, typically in case-control studies.

Author: Chris Barnes <christopher.barnes at imperial.ac.uk> and Vincent Plagnol <vincent.plagnol at cimr.cam.ac.uk>

Maintainer: Chris Barnes <christopher.barnes at imperial.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNVtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNVtools")

 

PDF	R Script	Copy Number Variation Tools
PDF		Reference Manual

Details

biocViews	GeneticVariability, Software
Version	1.80.0
In Bioconductor since	BioC 2.5 (R-2.10) (10.5 years)
License	GPL-3
Depends	R (>= 2.10), survival
Imports
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNVtools_1.80.0.tar.gz
Windows Binary	CNVtools_1.80.0.zip
Mac OS X 10.11 (El Capitan)	CNVtools_1.80.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNVtools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNVtools
Package Short Url	https://bioconductor.org/packages/CNVtools/
Package Downloads Report	Download Stats