This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BioTIP.
Bioconductor version: 3.10
Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.
Author: Zhezhen Wang, Biniam Feleke, Qier An, Antonio Feliciano y Pleyto and Xinan Yang
Maintainer: Zhezhen Wang <zhezhen at uchicago.edu>, X Holly Yang < xyang2 at uchicago> and Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>
Citation (from within R,
enter citation("BioTIP")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BioTIP")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioTIP")
HTML | R Script | BioTIP- an R package for characterization of Biological Tipping-Point |
Reference Manual |
biocViews | GeneExpression, RNASeq, Sequencing, Software, Transcription |
Version | 1.0.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (< 6 months) |
License | GPL-2 |
Depends | R (>= 3.6) |
Imports | igraph, cluster, psych, stringr, GenomicRanges |
LinkingTo | |
Suggests | knitr, markdown, base, rmarkdown, ggplot2 |
SystemRequirements | |
Enhances | |
URL | https://github.com/xyang2uchicago/BioTIP |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | BioTIP_1.0.0.tar.gz |
Windows Binary | BioTIP_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | BioTIP_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BioTIP |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioTIP |
Package Short Url | https://bioconductor.org/packages/BioTIP/ |
Package Downloads Report | Download Stats |
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