lm_qvalue {swfdr} | R Documentation |
The recipe for turning pvalues into qvalues is adapted from package 'qvalue' and articles by Storey, Tibshirani, Taylor, Siegmund.
lm_qvalue(p, X, pfdr = FALSE, pi0 = NULL, smoothing = c("unit.spline", "smooth.spline"), ...)
p |
numeric vector of p-values |
X |
matrix of covariates (can be missing if pi0 is specified instead) |
pfdr |
logical, making estimates robust for small p-values and a small sample size |
pi0 |
list with pi0 estimates from lm_pi0 |
smoothing |
character, type of smoothing used to fit pi0. Note the default in this function is different than in lm_pi0. |
... |
other parameters (passed on to lm_pi0 if pi0 is not provided) |
list