topLoci {sesame}R Documentation

Top loci in differential methylation

Description

This is a convenience function to show top differential methylated segments. The function takes a coefficient table as input and output the same table ordered by the sigificance of the locus.

Usage

topLoci(cf1)

Arguments

cf1

coefficient table of one factor from diffMeth

Value

coefficient table ordered by p-value of each locus

Examples

data <- sesameDataGet('HM450.76.TCGA.matched')
cf <- DMR(data$betas, data$sampleInfo, ~type)
topLoci(cf[[1]])

[Package sesame version 1.4.0 Index]