getReadLength {seqsetvis} | R Documentation |
determine the most common read length for input bam_file. uses 50 randomly selected regions from query_gr. If fewer than 20 reads are present, loads all of query_gr.
getReadLength(bam_file, query_gr)
bam_file |
indexed bam file |
query_gr |
GRanges to read from bam file |
numeric of most common read length.