calcTGIF {scTGIF}R Documentation

Function for connecting cellular patterns and functional patterns using jNMF

Description

calcTGIF function calculates what kind of cellular patterns and functional patterns are contained in single-cell RNA-seq data and reportTGIF function generates report of analytic result.

Usage

calcTGIF(sce, rank)

Arguments

sce

A object generated by instantization of SingleCellExperiment-class.

rank

Rank parameter of joint NMF algorithm.

Value

The result is saved to metadata slot of SingleCellExperiment object.

Author(s)

NA

Examples

showMethods("calcTGIF")

[Package scTGIF version 1.0.0 Index]