createSampleSubmission {readat} | R Documentation |
Creates a data table of contents for a SomaLogic sample submission form.
createSampleSubmission(slides, controls, comments, samples, sampleMatrix = c("EDTA-Plasma", "Sodium Citrate Plasma", "Serum"), siteId = "WCQ", studyName = "", studyId = "", runName = "Set A")
slides |
A data frame of slide data, as imported by
|
controls |
A data frame of control data, as imported by
|
comments |
A data frame of comment data, as imported by
|
samples |
A data frame of sample data, as imported by
|
sampleMatrix |
A string giving the type of samples (plamsa or serum). |
siteId |
A string giving the SomaLogic ID of your site or institution. |
studyName |
A string giving your institution's name for the study. |
studyId |
A string giving the SomaLogic ID of the study |
runName |
A string naming the plate. |
A data table with the 96 rows (one plate worth, with each row representing a sample). It contains the following columns:
One to ninety six.
From slides.csv
.
Position in slide, from 1 to 8.
Position in plate, from A1 to H12
Always 40.
From controls.csv
.
From controls.csv
.
From controls.csv
.
From samples.csv
.
sampleMatrix
for samples; blank for controls.
siteId
for samples; blank for controls.
studyName
for samples; blank for controls.
Currently blank.
Currently blank.
Currently blank.
studyId
for samples; blank for controls.
runName
for samples; blank for controls.
writeSampleSubmissionForm
for usage examples.