getColoredPathway {rWikiPathways} | R Documentation |
Retrieve a pathway image file with specified nodes colored by specified colors. This service may not always be available.
getColoredPathway( pathway, revision = 0, graphId = NULL, color = NULL, fileType = c("svg", "png", "pdf") )
pathway |
WikiPathways identifier (WPID) for the pathway to download, e.g. WP4 |
revision |
( |
graphId |
A |
color |
(optional) String or vector indicating the highlighting color, e.g., #FF8855. Default is red. You can provide a single color for mutiple nodes; otherwise color list and graphId must be the same length. |
fileType |
(optional) Image file format, e.g., svg (default), png or pdf. |
Image file
## Not run: svg = getColoredPathway(pathway="WP554", graphId="ef1f3") svg = getColoredPathway(pathway="WP554", graphId=c("ef1f3","e68e0")) svg = getColoredPathway(pathway="WP554", graphId=c("ef1f3","e68e0"), color="00FF00") svg = getColoredPathway(pathway="WP554", graphId=c("ef1f3","e68e0"), color=c("FF0000", "0000FF")) # writeLines(svg, "pathway.svg") ## End(Not run)