OPPARList-class {oppar} | R Documentation |
A S4 class for the output of OPPAR main function, opa.
## S4 method for signature 'OPPARList' show(object) ## S4 method for signature 'OPPARList' x$name
object |
An object of type OPPARList |
x |
Object of type OPPARList. |
name |
Name of the slot to access. |
returns the number of outlier features detected, the number of samples retained,
and the parameters used to run the opa
function
extracts slots from an object of type OPPARList
.
show
: A show method for objects of class OPPARList
$
: A method to extract slots in OPPARList
profileMatrix
A matrix of 0, -1 and 1 representing outlier genes in samples
upper.quantile
Numeric. The upper quantile cut-off for detection of outliers
lower.quantile
Numeric. The lower quantile cut-off for detection of outliers
group
A factor vector representing the group to which each sample belong
.Data
matrix