count.stats {msmsEDA} | R Documentation |
Computes the number of proteins identified, the total spectral counts, and a summary of each sample
count.stats(msnset)
msnset |
A MSnSet with spectral counts in the expression matrix. |
A data frame with one row by sample and with variables:
proteins |
Number of identified proteins in sample |
counts |
Total spectral counts in sample |
min |
Min spectral counts |
lwh |
Tukey's lower hinge spectral counts |
med |
Median spectral counts |
hgh |
Tukey's upper hinge spectral counts |
max |
Max spectral counts |
Josep Gregori
data(msms.dataset) msnset <- pp.msms.data(msms.dataset) res <- count.stats(msnset) res